PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g090350.1
Common NameMTR_8g090350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 287aa    MW: 32413.5 Da    PI: 6.366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g090350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20112162256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Medtr8g090350.1 112 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAFAYDNAAYKLRGE 162
                      59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.19E-33111170No hitNo description
PROSITE profilePS5103222.945112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31112170IPR001471AP2/ERF domain
SMARTSM003801.2E-34112175IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23112170IPR016177DNA-binding domain
PRINTSPR003674.4E-11113124IPR001471AP2/ERF domain
PfamPF008472.7E-13113162IPR001471AP2/ERF domain
PRINTSPR003674.4E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATTINMYNS NKNMTHGFLD PYNEEELMKA LEPFMKTSSS SSISEQSPLT PNLNPNYGIQ  60
ASSIGLNQLT PSQILQIQTQ FQTRQQQQQN KPLTQKPVPM KYFGIPSKPT KLYRGVRQRH  120
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAF AYDNAAYKLR GEFSRLNFPH MRFHGSYNPL  180
PSSVDSKLQA ICETLAISQK QGNTEKPCSS VEDVKPLVHV PAQSMGEFVF EDFKAFSSMS  240
DECSLGLSSP ESGLTFLDFS DSSQWDEVEN FGLKKFPSVE IDWEAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21111169160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.165301e-154leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g090350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439668e-93GU443966.1 Trifolium repens clone BAC 113f04 bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446832.10.0ethylene-responsive transcription factor ERF060
SwissprotO656652e-83ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A072TTP80.0A0A072TTP8_MEDTR; Ethylene response factor
STRINGXP_004504059.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-67ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]