PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g086410.4
Common NameMTR_8g086410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 429aa    MW: 49047.8 Da    PI: 6.9747
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g086410.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.4e-31112165255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH++F++ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  Medtr8g086410.4 112 PRLRWTPDLHHSFMHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 165
                      8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-29108166IPR009057Homeodomain-like
PROSITE profilePS5129411.579108168IPR017930Myb domain
SuperFamilySSF466892.33E-14110166IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-22112167IPR006447Myb domain, plants
PfamPF002492.5E-8113164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNMSDGYEKQ ENERSTGKSE EHGEDTSMGS SSHNKCSISF DLNEEASRSD QDVNNEENDE  60
ACDHELVNNG DDDDEKLAKD DDEGSSSSTK RSSGSNERRR NGVRQYVRSK MPRLRWTPDL  120
HHSFMHAVER LGGQERATPK LVLQLMNVRG LSIAHVKSHL QMYRSKKLDE AGQVLSPTHR  180
STHELGSISH HVAHQSMIPH QHFKMANGGI VLETNYNQHS YNFHSLLHPS SLSHSHSHSH  240
SKPINSRHQE WYLNHQSWRP SYMSNELVMP STTLNTQGRS SITLNQQLQV KDNTVTTTLA  300
PMRPSQFLEE KRWPPLDIMN NHPYWKKNLH DHFSSDRTSL RPAEVSFGNN TRSRENISNI  360
NNDHNYFNSS KIEFDPPFRI KLNQETLLKD KQWVPDLQLS LSQTNGNNDG KSDGLRETKE  420
IDTKLSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17113167458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g086410.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397460.0AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence.
GenBankAC1654310.0AC165431.9 Medicago truncatula clone mth2-117b21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446647.10.0uncharacterized protein LOC11419043 isoform X2
TrEMBLA0A072TT310.0A0A072TT31_MEDTR; MYB-like transcription factor family protein
STRINGAET042500.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-34G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]