PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g079580.1
Common NameMTR_8g079580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 229aa    MW: 25189.1 Da    PI: 5.8829
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g079580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.51.8e-3281091101
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk++rr+C +  C lapyfpa++p++++ vh +FG+s+v+k+l++ + ++r+++++slvy+Aear+rd vyG+vg  + l++ l+ ++ e
  Medtr8g079580.1   8 PCAACKHHRRRCDEAsCNLAPYFPADNPQRYNLVHSVFGRSKVSKILQEQDISHRKQVADSLVYQAEARLRDNVYGVVGPASFLEKTLKDVQDE 101
                      7***********8766****************************************************************************** PP

           DUF260  94 lallkeel 101
                      l+++k+el
  Medtr8g079580.1 102 LKKVKNEL 109
                      ***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3827109IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-318106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAEEIIRPCA ACKHHRRRCD EASCNLAPYF PADNPQRYNL VHSVFGRSKV SKILQEQDIS  60
HRKQVADSLV YQAEARLRDN VYGVVGPASF LEKTLKDVQD ELKKVKNELI KYLDPEIIQE  120
VLSNPDRFGF APSPNQNPQG HLVSQQPPTL DQLTTSQIIH LLQLKENIVR SDTGINSSGG  180
GGGEGQHIGA PAADAVIAPS FDNGSTSSCQ IQLQGEQQQV QQQPDQQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-26811711119LOB family transfactor Ramosa2.1
5ly0_B1e-26811711119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g079580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1485250.0AC148525.14 Medicago truncatula chromosome 8 clone mth2-24i13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629569.11e-168LOB domain-containing protein 36
TrEMBLG7LGC11e-167G7LGC1_MEDTR; LOB domain protein
STRINGAET040451e-167(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.22e-33LOB domain-containing protein 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]