PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g036105.1
Common NameMTR_8g036105
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 217aa    MW: 23579.7 Da    PI: 7.5541
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g036105.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.94.1e-39181181100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+k+C++apyf ++q + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+v++i++lqqq+++l+ae
  Medtr8g036105.1  18 PCGACKFLRRKCVKGCIFAPYFDSDQgTVHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMSLQAE 111
                      7***********************9988****************************************************************** PP

           DUF260  94 lallkee 100
                      l ++++ 
  Medtr8g036105.1 112 LTYVQAT 118
                      *999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.79117119IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-3818116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDYCGGKIGG SDQRGGGPCG ACKFLRRKCV KGCIFAPYFD SDQGTVHFAA VHKVFGASNA  60
SKLLMRIPAH KRLDAVVTLC YEALARARDP VYGCVAHIFA LQQQVMSLQA ELTYVQATLA  120
TMQRLPISLA PSLPNPQSSS PSFHSSSDHV GTNADMHSAS NMSMHFDPHQ PLSSLDLSSF  180
FNQSDQQLDD DELQALAREF VSRYLPGVRF QPSNSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-36151128104LOB family transfactor Ramosa2.1
5ly0_B2e-36151128104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226280.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g036105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525560.0BT052556.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-F-13 unknown mRNA.
GenBankBT1490770.0BT149077.1 Medicago truncatula clone JCVI-FLMt-11C11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445017.11e-160LOB domain-containing protein 19
SwissprotO813225e-75LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB7FKD71e-158B7FKD7_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGXP_004510943.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-69LOB domain-containing protein 31
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]