PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g036085.1
Common NameMTR_8g036085
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 233aa    MW: 24712 Da    PI: 7.6904
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g036085.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.84.9e-40231231100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdP+ G+v++i++lqqq+++l+ae
  Medtr8g036085.1  23 PCGACKFLRRKCIPGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVITICYEAQARLRDPIFGCVAHIFTLQQQVMSLQAE 116
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+ +
  Medtr8g036085.1 117 LSYLQGH 123
                      **99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.39522124IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3923121IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSINSGCSGS GCSGGANGGA CGPCGACKFL RRKCIPGCIF APYFDSEQGA SHFAAVHKVF  60
GASNVSKLLQ NVPVHKRLDA VITICYEAQA RLRDPIFGCV AHIFTLQQQV MSLQAELSYL  120
QGHLATYEVP QPPTPSPPQA LPMVSLANLP LAPSSAMPDT YDLSSLYEVP QTSSWVMQQR  180
TNEPRQYLGS DTSSTSNNGG DLQALARELL HRYGSIPHVA CSNAPSSHSL SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39191457130LOB family transfactor Ramosa2.1
5ly0_B2e-39191457130LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g036085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445014.11e-172LOB domain-containing protein 18
SwissprotO813231e-74LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A072TNF81e-171A0A072TNF8_MEDTR; LOB domain protein
STRINGXP_004510942.11e-114(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-70LOB domain-containing protein 18
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  3. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]