PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g113680.1
Common NameMTR_7g113680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 312aa    MW: 34854.5 Da    PI: 8.2498
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g113680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.27.8e-561302331101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdf
  Medtr7g113680.1 130 QLQSFWSNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDF 223
                      89******99999********************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdivpr++l
  Medtr7g113680.1 224 LVDIVPREDL 233
                      *******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.88E-33122224IPR009072Histone-fold
PfamPF008082.2E-21152215IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-37153230IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESGKRVNWS KSKKIVKSSV HNTNTALLYF ALLSLRGSQF SWNQASFFEG RMDHQGHNQN  60
PQMGVVGSGS QMPYGSNPYQ SNQMTGAPGS VVTSVGGMQS TGQPAGAQLG QHQLAYQHIH  120
QQQQQQLQQQ LQSFWSNQYQ EIEKVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA  180
RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS  240
IPRGTMPVAG PADALPYCYM PPQHASQVGT AGVIMGKPVM DPNMYAQQPH PYMAPQMWPQ  300
PPEQRPPSPD H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C3e-41140230294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B3e-41140230294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.151520.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182940.0JQ918294.1 Medicago truncatula nuclear transcription factor Y subunit C2 (NF-YC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626304.10.0nuclear transcription factor Y protein
SwissprotQ8L4B22e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLG7KYQ40.0G7KYQ4_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA19G42460.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-84nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]