PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g112330.1
Common NameMTR_7g112330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 130aa    MW: 14519 Da    PI: 8.3489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g112330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-192457134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C+ C+ttkTplWR gp+g+ktLCnaCG++yrk++
  Medtr7g112330.1 24 CADCKTTKTPLWRGGPNGPKTLCNACGIRYRKRR 57
                     ********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-151869IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-132158No hitNo description
Gene3DG3DSA:3.30.50.102.0E-152256IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.43E-142372No hitNo description
PfamPF003205.7E-172457IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6242454IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGIMDQMDKE CCSYDEMGVI KKFCADCKTT KTPLWRGGPN GPKTLCNACG IRYRKRRGCC  60
SKGQERERKR EKAEATSSDN DDLSECLKMK LVALGEEFLL QKKQRMIKLG EEEQAAVCLM  120
ALSCGFVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573761e-145AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626174.11e-90GATA type zinc finger transcription factor family protein
SwissprotQ9FJ101e-30GAT16_ARATH; GATA transcription factor 16
TrEMBLG7KWI01e-90G7KWI0_MEDTR; GATA type zinc finger transcription factor family protein
STRINGVIT_14s0060g01520.t011e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-30GATA transcription factor 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]