PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g091390.1
Common NameMTR_7g091390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 415aa    MW: 46212.6 Da    PI: 9.0669
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g091390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1359115155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Medtr7g091390.1  59 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 115
                      57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1559124IPR016177DNA-binding domain
PfamPF008475.8E-959115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-1260124IPR001471AP2/ERF domain
PROSITE profilePS5103218.51860123IPR001471AP2/ERF domain
SMARTSM003805.3E-1960129IPR001471AP2/ERF domain
PRINTSPR003674.0E-56172IPR001471AP2/ERF domain
PRINTSPR003674.0E-5105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MASSSSDPGK SAETSEAVAA ANDQLLLYRG LKKAKKERGC TAKERISKMP PCAAGKRSSI  60
YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDDEE AAARAYDLAA LKYWGPGTLI  120
NFPVTDYTRD LEEMQNVSRE EYLASLRRKS SGFSRGLSKY RGLSSRWGPS YGRMAGSDYF  180
SSIHHGIGDN SAAESEYVSG FCVERKIDLT NHIKWWGSNK NRHPDAGTRL SEEKKHGFAG  240
DIYCELKTLE QKVQPTEPYK MPELGPLHNE KKHKSSSISA LSILSESAAY KSMQEKAAKR  300
QENSTDNDEN ENKNIVNELD RGKAVEKPSN HDGSNNRLDI AMGMSGALSL QRNVYPLTSF  360
LSAPLLTSYN TVDPMVDPAL WTSLIPMLPA GLSRTSEVTK TEPDSTYNMF QPQE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.247120.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g091390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2368350.0AC236835.2 Medicago truncatula strain A17 clone mte1-66f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625290.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-169AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLG7KTH80.0G7KTH8_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGAES813560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-165AP2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]