PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g090060.1
Common NameMTR_7g090060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HRT-like
Protein Properties Length: 380aa    MW: 43097.1 Da    PI: 10.3895
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g090060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like59.74.7e-19263293131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCGv+l dGs+Ckr+Pv++R RC eHKGmRi
  Medtr7g090060.1 263 ICGVMLTDGSICKRPPVEKRVRCPEHKGMRI 293
                      8*****************************7 PP

2HRT-like62.27.5e-20346376131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCG+il+dGs+C+rqPvkgRKRC+eHKG+Ri
  Medtr7g090060.1 346 ICGIILDDGSTCRRQPVKGRKRCQEHKGRRI 376
                      8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVVNRLKREQ CDRTKHDSSF SRWKILIGPS DWEDYSKEKE GSTRYRIHNL PQKLGPGVYE  60
LGVAVSRSNL GREIYKLSTD PRRIVVVYLG KADNVRARLQ RYGRNGAHLS NTCMSDDSSL  120
RTGRSLFQEI FSQGFPIVYR WAPMQNEGDA LRTESQLLST FDYAWNTISN GTRRPDDIHQ  180
MLNKLASGTR TFSDVAKLIL PFTQKKVGIP IKSSKLHLTD DKLDEADSGS YNVLSRVFKF  240
NRSRPRIVQD TTVGSATNEN AKICGVMLTD GSICKRPPVE KRVRCPEHKG MRINASTTKA  300
IRSPKSELES IVRNAYRYQN ASHDVEDPPQ RTVKCHVEEG ITKTIICGII LDDGSTCRRQ  360
PVKGRKRCQE HKGRRIRAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g090060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479610.0AC147961.3 Medicago truncatula chromosome 7 clone mth2-39i23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625016.20.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLG7KQU40.0G7KQU4_MEDTR; Putative transcription factor HRT family
STRINGAES812340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-90effector of transcription2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]