PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083900.2
Common NameMTR_7g083900, MtrDRAFT_AC149131g32v2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 477aa    MW: 53147.4 Da    PI: 6.199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083900.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.7e-12289331754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  Av+Y+k+L
  Medtr7g083900.2 289 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVDYLKEL 331
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9288331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-12289335No hitNo description
Gene3DG3DSA:4.10.280.103.6E-15289344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.36E-7404465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MERYTLPLPS QQVHNTLTIP WTEPQQQESP SSWSTPNSEP KHNHEQDIAI AIAMAGSSLP  60
FFKPEPQPEP DNNFYNNNNV VNVNNVIPLP DNFLMHQNTN TIDSISNPHS FFHNNNNYFF  120
NNNNTNNPFE MGFENGFFMG NNNTSTSPVF MGGSLSASEF PPSLELDAAP VPPFSASFSM  180
PLELAQPQPQ QHHHQQQQQQ PTTLFQKRRG ALEIPRLETV GNKKKRKVEK SWEEEGSGGG  240
GGDDVDDFSE LNYDSDENGN DLNNSNGTVV TGGDQKGKKK KGLPAKNLMA ERRRRKKLND  300
RLYMLRSVVP KISKMDRASI LGDAVDYLKE LLQRINNLHN ELESTPPGSL LQPSASASFH  360
PLTPTPPTLP CRVKEDLYPG DLLSPKNQSP KVEVRVREGR AVNIHMFCTR RPGLLLSTMR  420
ALDNLGLDVQ QAVISCFNGF ALDVFRAEQQ CREGQDVLPE QIKAVLLDSA GYHGLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227KKKRKV
2278296KKKGLPAKNLMAERRRRKK
3290297ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.167830.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1362460.0BT136246.1 Medicago truncatula clone JCVI-FLMt-19P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449463.10.0basic helix loop helix protein BHLH23
SwissprotQ9LSE21e-114ICE1_ARATH; Transcription factor ICE1
TrEMBLQ2HUL60.0Q2HUL6_MEDTR; Basic helix loop helix protein BHLH23
STRINGGLYMA16G05390.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-102bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]