PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g074990.1
Common NameMTR_7g074990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 238aa    MW: 24876.9 Da    PI: 8.494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g074990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.8e-39201201100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++Cv+apyf +e+ + +fa+vhk+FGasnv+kll  +p+ +r da+ sl+yeA+ r+rdP+yG+vg+i +lqqq+++l+ae
  Medtr7g074990.1  20 PCGACKFLRRKCVQGCVFAPYFDSEHgTTHFAAVHKVFGASNVSKLLLGIPTGRRLDAAVSLCYEAQSRLRDPIYGCVGHIVALQQQVMSLQAE 113
                      7*********************999979****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+++
  Medtr7g074990.1 114 LSYLQSH 120
                      **99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.96119121IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3820118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSLNSSGSGS GGGGGSSGSP CGACKFLRRK CVQGCVFAPY FDSEHGTTHF AAVHKVFGAS  60
NVSKLLLGIP TGRRLDAAVS LCYEAQSRLR DPIYGCVGHI VALQQQVMSL QAELSYLQSH  120
INSSGLTQQP PLPPPQATAA PTVFSFADLP PTTATTMPVT YDMSTLFDSM GQPSFSMQQQ  180
RSSIDPRQYL AAHHHAPTST TAGIQSVACD LTHRQIGSSS VPSSNASSSA SFSKFSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623721.11e-173LOB domain protein
SwissprotO221313e-62LBD18_ARATH; LOB domain-containing protein 18
TrEMBLG7L0951e-173G7L095_MEDTR; LOB domain protein
STRINGGLYMA18G45320.13e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-62LOB domain-containing protein 18
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]