PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g055790.1
Common NameMTR_7g055790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17676.1 Da    PI: 10.9516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g055790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.83.2e-0971101535
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
           SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaev 35 
                      n+  r+ t+ k ++g+l K eELS+LC +ev
  Medtr7g055790.1  71 NDAARKETYKKTKKGLLNKVEELSILCRIEV 101
                      7888999***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.54559101IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-459114IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.67E-1160134IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-56181IPR002100Transcription factor, MADS-box
PfamPF003199.4E-871101IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-58196IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MTQISLIIIE FGERGTVINQ KSEVKEILKG PYVEGVSVLK VTTINFVFKF FSFVLVKTIT  60
RKKVKLEFNV NDAARKETYK KTKKGLLNKV EELSILCRIE VRGESGVLSK FRTMTKLEKK  120
KKMMNQETFK KQRVLKIKEQ TKKLRKDNRD K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742961e-102AC174296.26 Medicago truncatula clone mth2-72l21, complete sequence.
GenBankAC1482271e-102AC148227.14 Medicago truncatula clone mth2-8f11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622877.21e-101SRF-type transcription factor (DNA-binding and dimerization domain) protein
SwissprotQ9FJK31e-14AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLG7L0661e-101G7L066_MEDTR; SRF-type transcription factor (DNA-binding and dimerization domain) protein
STRINGPOPTR_0005s00420.14e-23(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.11e-09M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]