PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g015010.1
Common NameMTR_7g015010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 352aa    MW: 39686.7 Da    PI: 8.968
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g015010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.71.3e-31551752108
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssas 83 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak+ i++l+ +            +++s++e ++++  + + 
  Medtr7g015010.1  55 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQDIDQLPPLpnfspvgtnfnfGFPSSNELNNQQLFNFNR 148
                      689*************************************************************888877777777666665553333333333 PP

              TCP  84 nsssg...kaaksaakskksqksaasal 108
                       ++++   + ++++ + k+++k+ +  l
  Medtr7g015010.1 149 -NNIHwegSTSSQNSTWKSNPKEVSREL 175
                      .333355422222223333333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-2957174IPR005333Transcription factor, TCP
PROSITE profilePS5136930.20757115IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNKNSKEDFP LKQEVHQNSN DHEKEKANSP SSSSLASSQW PRLKDPRIVR VSRAFGGKDR  60
HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLNAAKQ DIDQLPPLPN  120
FSPVGTNFNF GFPSSNELNN QQLFNFNRNN IHWEGSTSSQ NSTWKSNPKE VSRELVNDKP  180
NYLMNSTQEE ENINKQGSNI EVPTATVFPN NNNMLQRPNH PSFLGLLNNM PLGTNYQWGG  240
TSNDAENSSQ LGNNGFITSL PPMLSLSTGN SSQMMLGTTQ SYFSSNVNAM EMDHHHQREI  300
HNHHYHQMLS SSNSSQNPMT NSLNNPSFSL AKFLQNSREN SSNKEQEFTT K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1962116155Putative transcription factor PCF6
5zkt_B6e-1962116155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g015010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524940.0BT052494.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-J-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447599.10.0transcription factor TCP17
TrEMBLA0A072U7500.0A0A072U750_MEDTR; Putative transcription factor TCP family
STRINGXP_004499467.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-46plastid transcription factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]