PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g092520.1
Common NameMTR_6g092520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HRT-like
Protein Properties Length: 369aa    MW: 41596.3 Da    PI: 9.7897
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g092520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like60.82.1e-19258288131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCGvil+dGs+C+++Pv++R RC+eHKGmRi
  Medtr6g092520.1 258 ICGVILDDGSICTKTPVEKRVRCHEHKGMRI 288
                      8*****************************7 PP

2HRT-like58.61e-18331361131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      +CG+iledG++C+rqPvkgRKRC+ HKG+Ri
  Medtr6g092520.1 331 TCGIILEDGTTCRRQPVKGRKRCHDHKGKRI 361
                      7*****************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLKREQCDYT KHDSSFSHWK ILIGPSDWED YSKGKEGSTR YRIHNLPENS GPGVYELGVA  60
ASTSGLGREI YKLSTDSCRV VVVYLGKGDN VRTRLQCYGR NGAHLGNGCS SFESSHQKGH  120
SLFHEIFLQG FPIVYRWASM QTKGDALQTE SQLLSTFDYA WNTINNGPRR PGDILEMLNK  180
ISSDTRTFSD VAKSLLPFTQ KKVGIPIKSS MLPVKDNKSN EVDSGNYNFL SRVFKFNRSR  240
PKIVQDKADF SVEKKDKICG VILDDGSICT KTPVEKRVRC HEHKGMRIRT AKSESKRGNA  300
CRYQNIKHDV EDLPQTVVES LVDESITKTI TCGIILEDGT TCRRQPVKGR KRCHDHKGKR  360
IRAFVPIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g092520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1661460.0AC166146.18 Medicago truncatula clone mth2-174g5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620925.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLG7KJT80.0G7KJT8_MEDTR; Effector of transcription protein
STRINGAES771430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-87effector of transcription2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]