PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g054150.1
Common NameMTR_6g054150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 232aa    MW: 25573.3 Da    PI: 9.8319
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g054150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26075.21.2e-234109199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqql 87 
                      +C++C+vlr++C++dC++ p++      ++q +++ ++ k++G+  +l+ll+++ +++   + +++sl+yeA  r+ +P yG++g+++++ +  
  Medtr6g054150.1   4 SCNGCRVLRKGCNDDCIIKPCLewissSESQGRATLFLTKFYGRIGLLNLLTNATNQNqnPQVVFKSLLYEASGRLVNPTYGVLGLFWTGDWSR 97 
                      6*********************9998777889*******************99955552368999***************************** PP

           DUF260  88 eqlkaelallke 99 
                      +++++e++l+++
  Medtr6g054150.1  98 CEAAVEAVLTGS 109
                      ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.7263111IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-194106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKLSCNGCRV LRKGCNDDCI IKPCLEWISS SESQGRATLF LTKFYGRIGL LNLLTNATNQ  60
NQNPQVVFKS LLYEASGRLV NPTYGVLGLF WTGDWSRCEA AVEAVLTGSN INDNFTMIDG  120
HTSSGTVNAE NHVLPKTYDI RHVAKGTNVD VKGKTQFKRV GKILKPKPRV GSVNSTTMLK  180
SLLKNTNMEI GERSSRVQTQ KINEAVENQV NLELTLGFDC QSTKSKKILD K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g054150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452376.11e-171LOB domain-containing protein 42
SwissprotQ9CA302e-52LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A072U9E01e-170A0A072U9E0_MEDTR; Putative transcription factor AS2-LOB family
STRINGAES845561e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-49LOB domain-containing protein 42
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]