PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g054080.1
Common NameMTR_6g054080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 232aa    MW: 25430 Da    PI: 9.2734
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g054080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.44.4e-234109199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqql 87 
                      +C++C+vlr++C++dC++ p++      ++q +++ ++ +++G+  +l+ll+++ +++   +++++sl+yeA  r+ +P yG++g+++++ +  
  Medtr6g054080.1   4 SCNGCRVLRKGCNDDCIIKPCLewissSESQGRATLFLTRFYGRIGLLNLLTNATNQNqnPQAVFKSLLYEASGRLVNPTYGVLGLFWTGDWSR 97 
                      6*********************9998777889*******************9995554236999****************************99 PP

           DUF260  88 eqlkaelallke 99 
                       ++++e++l+++
  Medtr6g054080.1  98 LEAAVEAVLTGS 109
                      999999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.6413111IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-184104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKLSCNGCRV LRKGCNDDCI IKPCLEWISS SESQGRATLF LTRFYGRIGL LNLLTNATNQ  60
NQNPQAVFKS LLYEASGRLV NPTYGVLGLF WTGDWSRLEA AVEAVLTGSN INDNFTMIDG  120
QTSSGTVNAE NHVLPKTYDI RHVAKGTNVD IKGKTQFKRA GKILKPKPRV GSVDSATMLK  180
SLLNNTNMEI GESSSRVQTE KINEAAENQV NLELTLGFDC HSTKSKKILD K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g054080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452375.11e-172LOB domain-containing protein 42
SwissprotQ9CA304e-50LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A072UBI41e-170A0A072UBI4_MEDTR; LOB domain protein
STRINGAES845561e-150(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-47LOB domain-containing protein 42
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]