PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027710.1
Common NameMTR_6g027710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 228aa    MW: 24421.4 Da    PI: 9.4934
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.5e-38401411101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf  +q ++kfa+vhk+FGasnv+k l+++p ++r++a++++ yeA+ar+ dPvyG+v+++l+lqqq++ ++ae
  Medtr6g027710.1  40 PCGACKFLRRKCSSGCIFAPYFGTDQgAAKFAAVHKVFGASNVSKHLSNIPASHRHEAAATISYEAQARLADPVYGCVSTLLALQQQVAAMQAE 133
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkeel 101
                      +++++++l
  Medtr6g027710.1 134 VSMMQTQL 141
                      **999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.28239141IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3840138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAESQGGNGS SSGNRRNKSA NAAAKRAIAR ATQDEPVITP CGACKFLRRK CSSGCIFAPY  60
FGTDQGAAKF AAVHKVFGAS NVSKHLSNIP ASHRHEAAAT ISYEAQARLA DPVYGCVSTL  120
LALQQQVAAM QAEVSMMQTQ LMNRRLAYAN ASTLQAPYQP PFQLVQQPNF NVPVQPAYSN  180
NSSASTTNLM NMNNFNPGFG LTMETAPSSQ SLEPFQSSRM SRFEKDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-354014311113LOB family transfactor Ramosa2.1
5ly0_B2e-354014311113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g027710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451538.11e-168LOB domain-containing protein 20
SwissprotQ9SRV33e-62LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A072U8581e-167A0A072U858_MEDTR; LOB domain protein
STRINGXP_004489657.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-46LOB domain-containing protein 20
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]