PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g027700.1
Common NameMTR_6g027700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 210aa    MW: 23186.2 Da    PI: 8.8103
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g027700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.2e-3771071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+l+rkC++ C++apyf ++q +++fa+vhk+FGa nv+k l+++p++++++am++++yeA+ar++dP++G+v++i +l++q++ l+ae
  Medtr6g027700.1   7 PCGACKHLKRKCTNRCIFAPYFGKKQnEASFAAVHKVFGAGNVSKHLSTIPTNHHKKAMETITYEAQARISDPINGCVSTICALKKQVKALQAE 100
                      7*********************9988689***************************************************************** PP

           DUF260  94 lallkee 100
                      ++++k++
  Medtr6g027700.1 101 VSMMKAQ 107
                      *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9036108IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MADISIPCGA CKHLKRKCTN RCIFAPYFGK KQNEASFAAV HKVFGAGNVS KHLSTIPTNH  60
HKKAMETITY EAQARISDPI NGCVSTICAL KKQVKALQAE VSMMKAQQQM NNGFAYVNAL  120
QTTDLQHQQM LQQPNFNVSV EPAYANNPSP SIEDLMNMNN FNPVLAATNN LMNMNNFNPG  180
FDTTKETASS SQSFQPFQNS RFSYHQGDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451537.11e-156lateral organ boundaries (LOB) domain protein
TrEMBLA0A072UIB61e-156A0A072UIB6_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA10G11031.19e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-43LOB domain-containing protein 20
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]