PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g018270.1
Common NameMTR_6g018270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 279aa    MW: 30525.6 Da    PI: 7.6382
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g018270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.33.1e-3041081100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l+++ +e+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q
  Medtr6g018270.1   4 SCNGCRVLRKGCSEDCSIRPCLewikcPQSQANATLFLAKFYGRAGLINLINSGSENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallkee 100
                      +++e++l +e+
  Medtr6g018270.1  98 AAVEAVLKGEP 108
                      ****9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381555.5E-1111278IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7943109IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKC PQSQANATLF LAKFYGRAGL INLINSGSEN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGEPIT PIDSEADENE  120
RGPPFKAYDI RHVSKDENLE ETKQVRTRSR FRRAMKPKPS KEVGSGSGSS SAKEVDRSKS  180
QESSLSQPGK DSESGVSVET SILFHDESEF EPESQAKVKG RAEGRAEEGL SDGVGLELRL  240
GIEPVSREEF MVPIKKRKIV LKDCSASSKV ELGLELSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.205240.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g018270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477410.0AC147741.12 Medicago truncatula clone mth2-17b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618732.10.0LOB domain-containing protein 40
SwissprotQ9M8863e-88LBD41_ARATH; LOB domain-containing protein 41
TrEMBLG7KMR00.0G7KMR0_MEDTR; Seed specific protein Bn15D17A
STRINGAES749500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-90LOB domain-containing protein 41
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]