PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g017055.1
Common NameMTR_067s0070, MTR_6g017055
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 410aa    MW: 46096.2 Da    PI: 10.0277
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g017055.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP146.22.4e-451242752132
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec......ea 75 
                      ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aik+lt++              s++s+s+c      ++
  Medtr6g017055.1 124 PVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSkqrnnnsevggdakSFTSSSDCedseiaTN 217
                      68**************************************************************999999999999887777788865554333 PP

              TCP  76 esssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmri 132
                      +ss+ +++++++g++ ++++ k+ + +++a    +++kesr+karararert++k ++
  Medtr6g017055.1 218 NSSNLKQHKEGAGSKHEEKKlKRVQIKEPACVRASKMKESREKARARARERTSNKISN 275
                      33333333444445555555255555555555667788****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-43125273IPR005333Transcription factor, TCP
PROSITE profilePS5136935.805126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607255272IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MFPYSSNPYP SFLPSSSSSS SSTSSLFPFP FLNPENASSN NNNNTLFHDP FSIPYIPIHH  60
HPHPNLHNIT NIPETLTNLA ASQENNNNSN NNNNNIAIPM PKQDPSSLGG GSHYGISCFL  120
AKKPVKKDRH SKIYTSQGLR DRRVRLSIEI ARKFFDLQDM LGFDKASNTL DWLFTKSKKA  180
IKDLTKSKQR NNNSEVGGDA KSFTSSSDCE DSEIATNNSS NLKQHKEGAG SKHEEKKLKR  240
VQIKEPACVR ASKMKESREK ARARARERTS NKISNIRGVQ EVELKKKYEN NLQAFQQDHH  300
SEGPRNDFNV IEESIVIKRK LKPSMMVSHH HHHPHYHQSH VIPKESSTSF NNNGDFNFLP  360
NSSPNWDANN NGTSSTNRST FCAIASMNLS TGLQIFGKSW EECTNPRLH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g017055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335610.0AC233561.5 Medicago truncatula clone mth2-181h10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451264.10.0transcription factor DICHOTOMA
TrEMBLG7ZY440.0G7ZY44_MEDTR; TCP family transcription factor
STRINGAES841860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-31TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]