PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g015350.1
Common NameMTR_6g015350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 334aa    MW: 37706.1 Da    PI: 6.8635
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g015350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.71.1e-30471732101
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg... 88 
                       g kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl+ ak +i+el+ ++ ++ +++    + +s   +++  +++   
  Medtr6g015350.1  47 FGTKDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEIDELPPLQIPQGNFTlgypSFASTIFNDDVRQNNtsi 140
                      589*************************************************************555554443332111222222211111111 PP

              TCP  89 .....................kaaksaakskksq 101
                                           + +++++++kk++
  Medtr6g015350.1 141 wksnskqglgdivtnkenwmnR-SEEDKEKKKEN 173
                      1111122344444444444321.11111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2948175IPR005333Transcription factor, TCP
PROSITE profilePS5136928.52749107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MINIPKEAEF PLKQEVLPSN DSTTSSSTTS QWLKLKDPRI VRVSRAFGTK DRHSKVYTIK  60
GLRDRRVRLS IQTAIHLYDL QDRLGLNQPS KVVDWLLNIA KDEIDELPPL QIPQGNFTLG  120
YPSFASTIFN DDVRQNNTSI WKSNSKQGLG DIVTNKENWM NRSEEDKEKK KENDNRDCAQ  180
HVSPDSLLPH LVPDNVSNII ISRGANQPSF LGSLNTMPLG YQLEPSSSHV PQLSNFGFVN  240
QIKDIDGNNG MHVVPFPSSL CLSTQQYFPS HVGAVEMDPT QINYHYDQML SSSSQNDSFN  300
PTQQLMRVTP KFFHSLNNSE SYSSHKDQDF PSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1854108155Putative transcription factor PCF6
5zkt_B2e-1854108155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g015350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451026.10.0transcription factor TCP13
TrEMBLA0A072U6R00.0A0A072U6R0_MEDTR; Putative transcription factor TCP family
STRINGXP_004489468.11e-109(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.17e-42plastid transcription factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]