PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g011250.1
Common NameMTR_6g011250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 185aa    MW: 20980.7 Da    PI: 4.7962
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g011250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.93e-3710108299
           DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      CaaCk++rrkC+kdC+lapyfp ++pk+f nvh lFG+sn++kllk++++++ r dam+s+++e+++ra+ Pv+G+vgvi+++   ++++ +el
  Medtr6g011250.1  10 CAACKYQRRKCPKDCPLAPYFPTDKPKRFDNVHNLFGVSNIVKLLKNIKDNDvRADAMDSIIFESDIRAEFPVHGCVGVIHQYLGLIRESTEEL 103
                      ************************************************99988**********************************9999999 PP

           DUF260  95 allke 99 
                      +++++
  Medtr6g011250.1 104 NRTQS 108
                      98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6228110IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3510107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNIMKSNKVC AACKYQRRKC PKDCPLAPYF PTDKPKRFDN VHNLFGVSNI VKLLKNIKDN  60
DVRADAMDSI IFESDIRAEF PVHGCVGVIH QYLGLIREST EELNRTQSLL AICKMNNHSQ  120
QQNLHSSLPS TAPQETNIPS FALDDLDNEE LNDLDGGVDA GWDLEPDDFF KDIEEYKERM  180
CMNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2310891290LOB family transfactor Ramosa2.1
5ly0_B2e-2310891290LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g011250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450914.21e-134LOB domain-containing protein 24
SwissprotQ9STS61e-32LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A072U5D51e-135A0A072U5D5_MEDTR; LOB domain protein
STRINGAES998505e-52(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-34LOB domain-containing protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  3. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]