PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g011200.1
Common NameMTR_6g011200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 251aa    MW: 28203.6 Da    PI: 4.7329
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g011200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601124e-359106197
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCaaCk++rrkC+++Cvlapyfpa++pk f n+h+lFG+sn++k+l+++++   r++am+s++ e+++ra+ P++G++gvi+ +   ++++++e
  Medtr6g011200.1   9 ACAACKYQRRKCTRECVLAPYFPADEPKMFGNAHRLFGVSNIQKILNEIKDGGqRDEAMKSIIVESKIRANFPIHGCLGVIHMYAGMINKSSKE 102
                      7************************************************77655*********************************9999999 PP

           DUF260  94 lall 97 
                      l++l
  Medtr6g011200.1 103 LDQL 106
                      9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2448110IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-349106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNIIKPNKAC AACKYQRRKC TRECVLAPYF PADEPKMFGN AHRLFGVSNI QKILNEIKDG  60
GQRDEAMKSI IVESKIRANF PIHGCLGVIH MYAGMINKSS KELDQLKWLL AYCKQNNHLQ  120
QQNLYSSIPS TSFQVFNNYG DVGNYYQNSE NNMMIPSSSY VSQTTPHDVN NSPIDTNLNI  180
NSMDTRGAKL SGDSNLGGDN VKLELDNNED LDDFDIQIRT IFDWEETEGL LDTDELPSSD  240
FNIDMNGPTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-271010412105LOB family transfactor Ramosa2.1
5ly0_B9e-271010412105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g011200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450910.10.0LOB domain-containing protein 27
TrEMBLA0A072UGP30.0A0A072UGP3_MEDTR; LOB domain protein
STRINGAES998506e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-33LOB domain-containing protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]