PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g005070.1
Common NameMTR_6g005070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 146aa    MW: 15925.9 Da    PI: 7.0702
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g005070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.72.3e-449107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+ql +l++el
  Medtr6g005070.1   9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQLLKLQKEL 102
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      +++++
  Medtr6g005070.1 103 DATNA 107
                      99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.6268109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-439106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKIFGASNV SKILNEVLPH  60
QREDTVNSLA YEAEARIKDP VYGCVGAISV LQRQLLKLQK ELDATNADLI RLNHQGSSSL  120
GLGHVHSDGF FNCPSNLSND SCGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5961118113LOB family transfactor Ramosa2.1
5ly0_B2e-5961118113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g005070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743420.0AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618147.11e-105LOB domain-containing protein 25
RefseqXP_024641260.11e-105LOB domain-containing protein 25
RefseqXP_024641261.11e-105LOB domain-containing protein 25
RefseqXP_024641262.11e-105LOB domain-containing protein 25
SwissprotQ8L8Q37e-67LBD25_ARATH; LOB domain-containing protein 25
TrEMBLG7KQ001e-103G7KQ00_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES743651e-104(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-59LOB domain-containing protein 25
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]