PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g098470.1
Common NameMTR_5g098470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 271aa    MW: 30880.7 Da    PI: 9.4829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g098470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-05110131223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C  C+k F ++  L+ H+r+H
  Medtr5g098470.1 110 SCDVCKKNFQSNKALHGHMRSH 131
                      7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-862131No hitNo description
Gene3DG3DSA:3.30.160.608.4E-46287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.8686487IPR007087Zinc finger, C2H2
PfamPF139121.0E-46488IPR007087Zinc finger, C2H2
SMARTSM003551.86486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034109136IPR007087Zinc finger, C2H2
SMARTSM003550.032109131IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-7111133IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDPNDQKKNN NKFDVGRIHQ NTRANSMKAI EKKKSLASIS KSCKVYEKPK GRHHDEGSTS  60
SKIHKCELCN KIFRCGKGLG GHKRIHSQAL GKEGESKAEA NCNSNDVKLS CDVCKKNFQS  120
NKALHGHMRS HPEREWRGMN PNKDNNIDYH DYDQDQYFLS AFNSKELVID EESKSWPRRL  180
FKTCKRGRSS GEVVIAAQIL VYMSTDKHLH DTFDEDLDNE DKKENVLPST SGLVGDIDET  240
KLKNDNNKRR KKLVKLMNPY STSKDNVLLD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g098470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4630470.0CU463047.2 Medicago truncatula chromosome 5 clone mth2-71h21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618052.10.0zinc finger protein AZF1
TrEMBLG7K0M60.0G7K0M6_MEDTR; C2H2 and C2HC zinc finger protein
STRINGAET010110.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-14C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]