PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g095860.1
Common NameMTR_5g095860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YB
Protein Properties Length: 171aa    MW: 18893.9 Da    PI: 4.3667
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g095860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.78.8e-161693390
            NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                     e  r +Pianv r+mkk+lP++aki++++      c s       ++ ++ c+ + r ti+++dll ++ +lGf+ y++    y++ +
  Medtr5g095860.1 16 EFSRAFPIANVHRLMKKALPQHAKITDET------CSSG----KKTDQNHYCNLDYRTTITAEDLLISMQKLGFDVYAACSLRYIQLF 93
                     557999*******************9986......5543....35678999***************************9999999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.3E-101886IPR009072Histone-fold
SuperFamilySSF471131.91E-91985IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MLEDGVQPAS SRVHEEFSRA FPIANVHRLM KKALPQHAKI TDETCSSGKK TDQNHYCNLD  60
YRTTITAEDL LISMQKLGFD VYAACSLRYI QLFCHRARVS QYAPPPPPLP PQDFQAHNFP  120
LDPNFVLADP TEMGAILDDD DDERELGDGG GDGNSSDGSF DVFAFLNSDD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g095860.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317420.0CR931742.2 Medicago truncatula chromosome 5 clone mth2-28i20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639803.14e-69nuclear transcription factor Y subunit B-3
TrEMBLG7KEG21e-123G7KEG2_MEDTR; CCAAT-box-binding factor HAP3-like protein
STRINGAET007831e-124(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2119923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-14nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]