PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g083340.1
Common NameMTR_5g083340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 408aa    MW: 44962.7 Da    PI: 4.4874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g083340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-1984133255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a++ a+++++g
  Medtr5g083340.1  84 KYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAQEAALAYDYAARAMYG 133
                      8*****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1384133IPR001471AP2/ERF domain
PROSITE profilePS5103223.03784141IPR001471AP2/ERF domain
CDDcd000187.20E-3384142No hitNo description
SMARTSM003801.3E-3684148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3284142IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2284142IPR016177DNA-binding domain
PRINTSPR003673.4E-108596IPR001471AP2/ERF domain
PRINTSPR003673.4E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGAPAYDQCF NVSLAPLELS KKRKTRSRGK GTKSVAETLA KWKEYNEKLY AGKDDGKPKR  60
KAPAKGSKKG CMKGKGGPQN SENKYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFPTAQEA  120
ALAYDYAARA MYGPSARLNF PDISDYRSIQ EYLKDSSAAA ASCCSSVATT PATSETTTVS  180
SHSEVCAIED VKEIPRIPVH MNNTVDVCYK GYEATSPTSR MKQEPMDEPD DIIDLGGGEI  240
QDANSEGTQT LTQPQTHDAV LVGEGVCNDQ MDFSWMDNFD FDDDYLKSFS VDEFFHVDDF  300
FEVDELLGQL DNNPIDDSGV MQSLDFGQVG LPEESNPQVG TTSSFFYELE NPDAKLLGSL  360
PHMERTASGV DYGLPLNFNG GGEDTPFLDL DYDLNHDSRG MQGRKND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1885141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143090.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g083340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023350.0CU302335.1 Medicago truncatula chromosome 5 clone mth2-155g22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616701.10.0dehydration-responsive element-binding protein 2A
RefseqXP_024639092.10.0dehydration-responsive element-binding protein 2A
TrEMBLG7K7790.0G7K779_MEDTR; Dehydration-responsive element-binding protein
STRINGAES996590.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-30ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]