PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g083330.1
Common NameMTR_5g083330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 300aa    MW: 32860.6 Da    PI: 4.7913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g083330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-173483255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr++  +g+WvAeIr+p+    +  r  lg+f ta+eAa a++ a+++++g
  Medtr5g083330.1 34 KYRGVRQRT-WGKWVAEIREPN----SgSRLKLGTFPTAQEAALAYDSAARAMYG 83
                     8*****999.**********93....35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-303492No hitNo description
PROSITE profilePS5103220.7843491IPR001471AP2/ERF domain
SMARTSM003806.6E-333498IPR001471AP2/ERF domain
PfamPF008475.4E-123483IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-203492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-293492IPR001471AP2/ERF domain
PRINTSPR003673.2E-83546IPR001471AP2/ERF domain
PRINTSPR003673.2E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCGESLTKWK KYNAQLYAGK DDGIPKLKHL QKNKYRGVRQ RTWGKWVAEI REPNSGSRLK  60
LGTFPTAQEA ALAYDSAARA MYGTSARLNL PDISDYSSVK EYLMDSSSAA ASRSSSLATM  120
PATSEKTTAS SHSEVCVAEA VNEIPKLPVN MNNSVEIVEF GGGARYDKPI DEYGLRQSLD  180
LGQIGSPEEK SFSMDELLGH IDDNLIDEYG AMQSLDFVQI GSPKESNNPH VGTTLSLFYE  240
LENRDAMLSG ILPHAKHTPS GVDYGLPLNF NGEGEDTPFL DLDYDLNQDS RGMQGRKTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-173591360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g083330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023350.0CU302335.1 Medicago truncatula chromosome 5 clone mth2-155g22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616701.11e-110dehydration-responsive element-binding protein 2A
RefseqXP_024639092.11e-110dehydration-responsive element-binding protein 2A
TrEMBLG7K7780.0G7K778_MEDTR; Dehydration-responsive element-binding protein
STRINGAES996580.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-31ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]