PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g080470.1
Common NameMTR_5g080470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 193aa    MW: 21179.6 Da    PI: 5.9986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g080470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.49.8e-387105198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkCa+dCv+apyf  eq +++f +vhk++Gasnv++ll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++l++e
  Medtr5g080470.1   7 SCGACKFLRRKCASDCVFAPYFSYEQaSSHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEE 100
                      6***********************9978****************************************************************** PP

           DUF260  94 lallk 98 
                      ++ l+
  Medtr5g080470.1 101 IDILG 105
                      98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4236108IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-367103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCAS DCVFAPYFSY EQASSHFSAV HKVYGASNVS RLLSHLPIQN  60
RSDAAITISY EALARMQDPI YGCVAHIYAL QHQVASLQEE IDILGSVMAN SSVSVVNCGN  120
VQAPMNSNNG TQYYHNQSFE SYLDMELIPN AHGFPEPLYG DSNSNPLEKF LSGIDQEGFL  180
NHPWFKHNNG DI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531027105LOB family transfactor Ramosa2.1
5ly0_B2e-3531027105LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g080470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1290901e-169AC129090.23 Medicago truncatula clone mth2-14i8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616452.11e-143LOB domain-containing protein 33
SwissprotQ9LHS86e-57LBD33_ARATH; LOB domain-containing protein 33
TrEMBLG7KGT31e-141G7KGT3_MEDTR; LOB domain protein
STRINGAES994101e-142(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-55LOB domain-containing protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]