PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g080030.1
Common NameMTR_5g080030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family YABBY
Protein Properties Length: 413aa    MW: 47572.7 Da    PI: 5.3278
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g080030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY27.69.1e-0917224491163
            YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvP...saynrfikeeiqrikasnPdishreafsaaaknWahf 163
                       +    + + +  +e + v+++p  ++   kr+ +P   s yn f+k+e  r+ka+ Pd+  r    +a   W  +
  Medtr5g080030.1 172 YS---SQITGIGYQEFQVVQQAPSKNKEKKKRRGAPigqSGYNIFLKQECARLKANHPDVGGRKIIDMAIDAWNKL 244
                      22...222234678888999999999999999999988899****************************9999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101116.63533130IPR001606ARID DNA-binding domain
SMARTSM010141.2E-737126No hitNo description
SMARTSM005018.2E-741131IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.6E-1544128IPR001606ARID DNA-binding domain
SuperFamilySSF467746.67E-1744131IPR001606ARID DNA-binding domain
PfamPF013888.3E-1444126IPR001606ARID DNA-binding domain
SuperFamilySSF470956.55E-11193263IPR009071High mobility group box domain
SMARTSM003981.3E-7202272IPR009071High mobility group box domain
PROSITE profilePS501189.478203271IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-8207272IPR009071High mobility group box domain
CDDcd013907.34E-7208262No hitNo description
PfamPF005055.9E-10208267IPR009071High mobility group box domain
SuperFamilySSF470954.06E-8268339IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.106.3E-6274342IPR009071High mobility group box domain
SMARTSM003980.0051279347IPR009071High mobility group box domain
PfamPF090113.9E-5280343IPR009071High mobility group box domain
CDDcd013906.55E-6280342No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEEGNELVME MVPYENENEI ISSMEEGKEL EMELEMVPYY TLTESFYRKL KELLDPSGFN  60
LIYDVRKTSL DLYLFYLEVT KRGGYHQVDQ EKKWGEVVSA LKLEGNNATL CDQLEKLYKE  120
LLYKFETLYF YRSPATGSNT GPVERNQNST TSLSQLMDDQ DYLKARKISE HYSSQITGIG  180
YQEFQVVQQA PSKNKEKKKR RGAPIGQSGY NIFLKQECAR LKANHPDVGG RKIIDMAIDA  240
WNKLSDNEKR PYEEASMKIK EEVKEAPTNN KEKKKHRGVP RGQKSAYQIF LKHECARLKA  300
DHQFQGDRKL KAIDAWKMMS PLEKLPYEEE SMKIKEEIKA AMIQKSTEDL NRDEERPIVC  360
GDYYSVTSQP LSNDSFGNNA AVDLTEKVSE DPFFPGDLND HHLLDFPSGE PK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g080030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541901e-146CR954190.2 Medicago truncatula chromosome 5 clone mth2-17o13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616418.10.0high mobility group B protein 10 isoform X1
TrEMBLG7KBS30.0G7KBS3_MEDTR; ARID/bright DNA-binding domain protein
STRINGAES993760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1243222
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]