PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g062700.1
Common NameMTR_5g062700, WXP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 372aa    MW: 41192.4 Da    PI: 5.4357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g062700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20172221255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Medtr5g062700.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYRLRG 221
                      59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.25E-34171230No hitNo description
SMARTSM003802.1E-37172235IPR001471AP2/ERF domain
PROSITE profilePS5103223.077172229IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23172229IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-32172230IPR001471AP2/ERF domain
PRINTSPR003673.7E-11173184IPR001471AP2/ERF domain
PfamPF008473.1E-14173221IPR001471AP2/ERF domain
PRINTSPR003673.7E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDFFNNSQDP FNGELMEVLE PFMKSSSISP SSPPSLNSHL PSTSSSSSSP FYSSTPPFFQ  60
PSFSPQSSSS SSSFPPQPNF YTENGYCSSM MNYQFPSLGN SSTSQNNFIG FEQPQQPNSV  120
IGLNTLTPSQ INQIQAQIQF QQTQSNNSSL NFLGPKPIPM KQPGVPPKPT KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDRAAYRLR GDFARLNFPN MKDQQQGGMF  240
GEFKVLHSSI DAKLDAICES LGNNNSSDNV KNKKQGKGSK KSLKKEVEAQ PQPQPLVVVE  300
NNNDDNNNTN TNKVVVECGS SLSSHSEGGS DDSSPLSDLT FGEFAEPQWE NGFEQFNLQK  360
FPSYEIDWAS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23171229160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.57890.0flower| glandular trichome| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g062700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0161550.0FP016155.2 Medicago truncatula chromosome 5 clone mte1-16i20, COMPLETE SEQUENCE.
GenBankFP1022130.0FP102213.2 Medicago truncatula chromosome 5 clone mtrs-161b8, COMPLETE SEQUENCE.
GenBankJN5958910.0JN595891.1 Medicago truncatula putative AP2/EREBP transcription factor (WXP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615022.10.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E41e-77RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLG7KA780.0G7KA78_MEDTR; AP2 domain class transcription factor
STRINGAES979800.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-43related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Zhang JY,Broeckling CD,Sumner LW,Wang ZY
    Heterologous expression of two Medicago truncatula putative ERF transcription factor genes, WXP1 and WXP2, in Arabidopsis led to increased leaf wax accumulation and improved drought tolerance, but differential response in freezing tolerance.
    Plant Mol. Biol., 2007. 64(3): p. 265-78
    [PMID:17347795]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  6. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  7. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]