PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g058470.1
Common NameMTR_5g058470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 299aa    MW: 33079.2 Da    PI: 8.9308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g058470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1894144155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Medtr5g058470.1  94 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 144
                      59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-1794153No hitNo description
PROSITE profilePS5103221.93195153IPR001471AP2/ERF domain
PfamPF008473.0E-1195144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2895154IPR001471AP2/ERF domain
SMARTSM003807.2E-3395159IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1895154IPR016177DNA-binding domain
PRINTSPR003678.1E-996107IPR001471AP2/ERF domain
PRINTSPR003678.1E-9118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900030Biological Processregulation of pectin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKVSLYKYIF FTSPNSVPIA SFTLHFENIT NKTKSHTHIK KRETPSTHTL KKTFLHPFIM  60
VKTEINKINK EKPKPKPMQQ HVLSTKAASN DKKKKYKGVR MRSWGSWVSE IRAPNQKTRI  120
WLGSYSTAEA AARAYDAALL CLKGSSATNL NFPLETSSHF IPQENISMSP KSIQRVAAAA  180
AAASSSSSSS NNDVTNTIST PPTSSSSLVS SPSMSSSPSD QIDDDVSLFS SFGACDDHYQ  240
ANDQSMAMMD SWYGFDGLLQ SPKHVDQMLS GSLFDIDSTQ VLLDDWYEEG DISLWSFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1592158268ATERF1
3gcc_A4e-1592158268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.173921e-62root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g058470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467575e-60BT146757.1 Medicago truncatula clone JCVI-FLMt-5M3 unknown mRNA.
GenBankCR5387235e-60CR538723.1 M.truncatula DNA sequence from clone MTH2-27D24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614739.20.0ethylene-responsive transcription factor ERF014
SwissprotQ9SFE42e-43ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLG7K8S80.0G7K8S8_MEDTR; AP2 domain class transcription factor
STRINGAES976971e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-29ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]