PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g039600.1
Common NameMTR_5g039600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 417aa    MW: 44227.7 Da    PI: 6.915
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g039600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.25e-4161193289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  Medtr5g039600.1  61 PPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshyfrg 154
                      789******************************************************************9997667777777744444555556 PP

              TCP  89 ......................................k 89 
                                                            +
  Medtr5g039600.1 155 nyfnpssfsstaaqlrnraewdrtmnmnmnmnmnvvadD 193
                      666665555555544444444444444444444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-4066214IPR005333Transcription factor, TCP
PROSITE profilePS5136927.68367121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MELEGDHHQS NGIRSRPNFP LQLLEKKDNN ILDVSEEQTC TTTGNDGCTA IISSDQQKKP  60
PPKRASTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA  120
ATGTGTIPAN FTSLNISLRS SGSTMSAPSH YFRGNYFNPS SFSSTAAQLR NRAEWDRTMN  180
MNMNMNMNVV ADDSRRSSNS TMLENPSSLS AMLNFNNVQN AILQAKQELR EENAAATASG  240
GGGGFELLGS DSDGSMGRKR RSEQELLSQN MGSYLLQSNV GSLPSSHASN TAAFWMVTGN  300
GNQGVNVNGG NGNDPIWAIP SVGNNGMYRG AMTSPNGFHF MNFAASPMNL MPGSQLGSGI  360
VGGGGGGILA ESNLSMLSAM NAYRQISTNG MSNSSGQHHG GGGGGDDEHD SSSQHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.54960.0flower| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g039600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0161570.0FP016157.1 Medicago truncatula chromosome 5 clone mth4-11o22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613691.10.0transcription factor TCP15
TrEMBLG7KCJ20.0G7KCJ2_MEDTR; TCP family transcription factor
STRINGAES966490.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-52TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]