PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g039000.1
Common NameMTR_5g039000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 284aa    MW: 32504.3 Da    PI: 6.3532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g039000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1877130356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe  +++  e++ +LA+ l+L+ rqV +WFqNrRa++k
  Medtr5g039000.1  77 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWK 130
                      456899***********************************************9 PP

2HD-ZIP_I/II131.24.1e-4276166191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+L+lqprqva+WFqnrRAR+ktkqlEkdy++Lkr+yda+k +n++L++++++L++e+
  Medtr5g039000.1  76 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEI 166
                      69**************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2068134IPR009057Homeodomain-like
PROSITE profilePS5007117.39472132IPR001356Homeobox domain
SMARTSM003894.6E-1875136IPR001356Homeobox domain
CDDcd000861.44E-1577133No hitNo description
PfamPF000461.6E-1577130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-1979139IPR009057Homeodomain-like
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PfamPF021839.7E-17132172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MHEMAFFQAN FMLQTPHHHD DHHQPSSLNS ILPQDYHGGP SFLGKRCMSF SSGIELGEEA  60
NIPEEDLSDD GSQAGEKKRR LNMEQVKTLE KSFELGNKLE PERKMQLARA LNLQPRQVAI  120
WFQNRRARWK TKQLEKDYDV LKRQYDAIKL DNDALQAQNQ KLQAEILALK NREPTESINL  180
NKETEGSSSN RSENSSEIKL DMSRTPASDS PLSTHQHTTS RTFFPPSARP SSGIAQLFQT  240
SSRPEIQCQK IDQMVKEESL SNMFCGMDDQ AGFWPWLEQQ HFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.17970.0flower| leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g039000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5712610.0CT571261.1 Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613642.10.0homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-114ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLG7KB590.0G7KB59_MEDTR; Homeobox leucine zipper ATHB-like protein
STRINGAES966000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-107HD-ZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]