PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g027440.1
Common NameMTR_5g027440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 279aa    MW: 31419.2 Da    PI: 6.3554
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g027440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.8e-332579155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt++LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Medtr5g027440.1 25 KPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8162282IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-322279IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-242580IPR006447Myb domain, plants
SuperFamilySSF466894.3E-162581IPR009057Homeodomain-like
PfamPF002496.9E-92778IPR001005SANT/Myb domain
PfamPF143795.4E-21122168IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMESGGRGGI EGYDGMMMTM TRDPKPRLRW TTDLHDRFVD AVTKLGGPDK ATPKSVLRLM  60
GLKGLTLYHL KSHLQKYRLG QHARKQNEEQ FKENNRCSYV NFSNHSSGTN TNYGGDNEGG  120
EIQIGEALRQ QIEVQKRLEE QLEVQNKLQM RIEAQGKYLQ AVLEKAQTSL PQDGPGNLDA  180
SKAQLAEFNS ALTNFMENMN KDSKENILDM NEFHNKNHAQ AFNYQEVIGT EEHKELKPQV  240
EGGAVQLDLN IKGGNEHLVS ADGAEMESNM VSYRVYHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-182582158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182582158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182582158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182582158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g027440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9141330.0CU914133.2 Medicago truncatula chromosome 5 clone mth2-150o3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612656.20.0myb family transcription factor PHL11
SwissprotC0SVS46e-77PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLG7K8740.0G7K874_MEDTR; Myb-like transcription factor family protein
STRINGAES956140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51013142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-77G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]