PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g015880.1
Common NameMTR_5g015880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 232aa    MW: 25123.8 Da    PI: 8.0919
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g015880.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++p  +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q
  Medtr5g015880.1   2 SCNGCRVLRKGCSESCILRPCIqwidtPEAQGHATVFVAKFFGRADLMSFISNVPLPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  Medtr5g015880.1  96 AAVETVLR 103
                      **998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3631107IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPLPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPL PEFLGLDALA  120
STVDDSSEGE VTCNDARKIR DPNPKVRFMS SGGKRKRSGG EVLKLPATTD LNLRLTPQST  180
LTNGCRKEIR RPGTPSMNSE ESVTTVTCLE SGIGEDNYVH DGDRKVLNLF V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86200.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g015880.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1430320.0BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611614.11e-171LOB domain-containing protein 39
SwissprotQ9SZE82e-79LBD39_ARATH; LOB domain-containing protein 39
TrEMBLG7K3V21e-169G7K3V2_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES945721e-170(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-80LOB domain-containing protein 39
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]