PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g012630.1
Common NameMTR_5g012630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 263aa    MW: 30143.3 Da    PI: 9.763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g012630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC+ C+++F +   L  H++ H
  Medtr5g012630.1  4 YKCKLCSRTFINGKALGGHMKAH 26
                     9*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-7326IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-9326No hitNo description
SMARTSM003550.025426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-9213240No hitNo description
PfamPF139121.2E-8218240IPR007087Zinc finger, C2H2
SMARTSM003550.059218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MERYKCKLCS RTFINGKALG GHMKAHFATL RLSLPNPQPQ TQPHHTPTNL FSFFSSSENE  60
QNQQTVEQRD SNEKSLMYRL RENPKKSFKL SDPKFYFSTT ETIVHDRESE TESKNPTQKR  120
KLTFGQNSVQ KKLKQTLTNS HSPLTEAEPE PVTSLFNFSP EEEAAITLMM LSRDKWKINV  180
AVKEEEQEVC GKYKSHKSIC LQNETNLALT SSSDHKIFQC VFCPKVFGSY QALGGHKKSH  240
LYPSWKKKKK LCFFDLNLPP SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118133KRKLTFGQNSVQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g012630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370770.0AC137077.26 Medicago truncatula clone mth2-8g15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299433.11e-61PREDICTED: zinc finger protein ZAT4
RefseqXP_027361848.16e-62zinc finger protein ZAT1-like
TrEMBLA0A396HK840.0A0A396HK84_MEDTR; Putative transcription factor C2H2 family
STRINGAES942680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-22C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]