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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g011070.1 | ||||||||
Common Name | MTR_5g011070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 306aa MW: 34508.9 Da PI: 6.6498 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.1 | 1.2e-07 | 241 | 274 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Medtr5g011070.1 241 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 274 469*****************************87 PP | |||||||
2 | ELK | 25.4 | 3.2e-09 | 195 | 216 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Medtr5g011070.1 195 ELKIELKQGFKSRIEDVREEIL 216 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.4E-19 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-17 | 27 | 68 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.7E-23 | 80 | 135 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.4E-16 | 83 | 134 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 195 | 215 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 215 | 278 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 217 | 282 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.3E-11 | 217 | 282 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.74E-11 | 218 | 279 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 222 | 280 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 235 | 274 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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