PlantTFDB
Plant Transcription Factor Database
v5.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g011070.1
Common NameMTR_5g011070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 306aa    MW: 34508.9 Da    PI: 6.6498
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g011070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-072412742154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  Medtr5g011070.1 241 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 274
                      469*****************************87 PP
2ELK25.43.2e-09195216122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++ ++++E++
  Medtr5g011070.1 195 ELKIELKQGFKSRIEDVREEIL 216
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-192569IPR005540KNOX1
PfamPF037901.1E-172768IPR005540KNOX1
SMARTSM012569.7E-2380135IPR005541KNOX2
PfamPF037913.4E-1683134IPR005541KNOX2
PROSITE profilePS512139.132195215IPR005539ELK domain
PROSITE profilePS5007111.71215278IPR001356Homeobox domain
SuperFamilySSF466897.27E-16217282IPR009057Homeodomain-like
SMARTSM003895.3E-11217282IPR001356Homeobox domain
CDDcd000867.74E-11218279No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25222280IPR009057Homeodomain-like
PfamPF059201.1E-17235274IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQEPSLGMMQ GSGGGYGGDG GGENRQLKAE IATHPLYEQL LSAHVACLRV ATPIDQLPLI  60
DAQLSQSHHL LRSYISQQTH SLSPHDRQQL DNFLAQYLIV LCTFKEQLQQ HVRVHAVEAV  120
MACRDIENTL QALTGVSLGE GSGATMSDDE DEQLQMDYGL DNQSSGGGGD HDMMGLGPLL  180
PTESERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR AGKLPGDTTS VLKNWWQQHA  240
KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSVTSLKSKR KRVYCRPSNE  300
MHQEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13218274864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271291RKRNWHSNSQSVTSLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.26020.0flower| root| seed
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g011070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280590.0EF128059.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611171.10.0homeobox protein HD1
SwissprotQ9FPQ81e-168KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLG7KES20.0G7KES2_MEDTR; Class II knotted-like homeobox protein
STRINGAES941290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-157KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]