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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g471590.1 | ||||||||
Common Name | MTR_4g071590, MTR_4g471590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GATA | ||||||||
Protein Properties | Length: 297aa MW: 33117.8 Da PI: 5.443 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.7 | 1.8e-19 | 213 | 246 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG+++++ + Medtr4g471590.1 213 CSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGR 246 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.9E-74 | 24 | 295 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 9.5E-16 | 207 | 261 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.33E-14 | 209 | 270 | No hit | No description |
PROSITE profile | PS50114 | 11.134 | 211 | 243 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 211 | 244 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.33E-14 | 212 | 269 | No hit | No description |
Pfam | PF00320 | 3.2E-17 | 213 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 213 | 238 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEVVVAEALK PSLRTESIFQ QTICEEILCL NANNVVVGED FSVDDLLDFS NGEFQHGSVG 60 KEVDVCEEEE EEEHEKNSTT SGSEHERTED DDNSNSTTFS GAGDGESNSI FAGGLAVPAD 120 DVADLEWVSH FVDDSIPELS LLYPVQARSE PEPRPGPTNA YSQLSIIRRK PRTTKTRRPN 180 CNVWIFNPIL YSAKKQRKKP EAQTGGAHFQ RRCSHCHVQK TPQWRAGPLG PKTLCNACGV 240 RFKSGRLFPE YRPACSPTFS GEIHSNSHRK VLEMRRRKEV DEPVSGLNRI QMVTSW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17991 | 0.0 | leaf| root |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146689 | 0.0 | BT146689.1 Medicago truncatula clone JCVI-FLMt-4K11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607047.1 | 0.0 | GATA type zinc finger transcription factor family protein | ||||
Refseq | XP_013456438.1 | 0.0 | GATA type zinc finger transcription factor family protein | ||||
TrEMBL | G7JJU1 | 0.0 | G7JJU1_MEDTR; GATA type zinc finger transcription factor family protein | ||||
STRING | GLYMA12G04180.2 | 1e-125 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 4e-50 | GATA transcription factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g471590.1 |
Entrez Gene | 11440198 | 25494431 |
Publications ? help Back to Top | |||
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