PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g127930.1
Common NameMTR_4g127930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 513aa    MW: 55815.2 Da    PI: 8.2202
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g127930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.13e-15161220155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Medtr4g127930.1 161 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 220
                      57*******************666664477446*************************98 PP

2AP247.25.3e-15263314155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Medtr4g127930.1 263 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 314
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-23161230No hitNo description
SuperFamilySSF541711.37E-17161230IPR016177DNA-binding domain
PfamPF008472.9E-12161220IPR001471AP2/ERF domain
SMARTSM003807.3E-30162234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-16162229IPR001471AP2/ERF domain
PROSITE profilePS5103219.23162228IPR001471AP2/ERF domain
PRINTSPR003672.1E-6163174IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18263324IPR016177DNA-binding domain
PfamPF008476.6E-10263314IPR001471AP2/ERF domain
CDDcd000182.10E-25263324No hitNo description
PROSITE profilePS5103219.045264322IPR001471AP2/ERF domain
SMARTSM003801.5E-33264328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18264323IPR001471AP2/ERF domain
PRINTSPR003672.1E-6304324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDKSSSSPPT NTNNTSLAFS LSNNNFPNPS HSSSSHLSLF HSFTPYPSSI IPPSLTLTGS  60
NNPVEASPEA TDGGTTNLSI FTGGHKFEDF LGSSVAPTRT AAATCAPTQL QQFSTDNDVY  120
NSELKKTIAA CFPGGYPTEP NSEPQKPSPK KTVDTFGQRT SIYRGVTRHR WTGRYEAHLW  180
DNSCRREGQS RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFPIS NYEKEIDDMK  240
NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE  300
AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANCSLPIGG LSNKNNKNST DCVSETKINE  360
PIQSDEIDHP SSTSSATTLS FALPIKQDPS TDYWSNILGF HNNPSAVTTT TIPFNMDFSA  420
HVPSNTNSDN PHNAAFFSGS GIFVQQQNMN GSSGSNSSSS SSASTSSIPF ATPIFSLNSN  480
SSSYGNGNNW IGHTFQTHAK PSLFQTPIFG ME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.176730.0root| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1358010.0AC135801.24 Medicago truncatula chromosome 8 clone mth2-23o16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610101.20.0AP2-like ethylene-responsive transcription factor
SwissprotQ6PQQ31e-156AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLG7JVD90.0G7JVD9_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA17G07010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-143AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]