PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g111915.1
Common NameMTR_4g112490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 141aa    MW: 16243.5 Da    PI: 10.8725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g111915.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-1451101155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y GVr+++ +grW AeI+d s   ++ r +lg+f+ ae+Aa  ++ a++ l+g
  Medtr4g111915.1  51 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAALSYDSAARLLRG 101
                      5899******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-3051111No hitNo description
PfamPF008471.5E-852101IPR001471AP2/ERF domain
PROSITE profilePS5103219.7752109IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1952110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-2752110IPR001471AP2/ERF domain
SMARTSM003806.3E-3352115IPR001471AP2/ERF domain
PRINTSPR003676.0E-75364IPR001471AP2/ERF domain
PRINTSPR003676.0E-77591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MENKDTLKFP HQTHKNNNIS LIPHEIDKPY ENKERNTIKK IPKTSNKGHQ KKYLGVRQRP  60
SGRWIAEIKD SSQKLRLWLG TFDRAEDAAL SYDSAARLLR GRNAKTNFPN THEQDFSILG  120
KNPRAFQLLK HAMMKNHAVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1551109160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1551109463ATERF1
3gcc_A1e-1551109463ATERF1
5wx9_A6e-15521121475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g111915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378190.0AC137819.22 Medicago truncatula chromosome 8 clone mth2-21i24, complete sequence.
GenBankAC1620310.0AC162031.12 Medicago truncatula chromosome 8 clone mth2-194a22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609147.11e-102ethylene-responsive transcription factor 3
SwissprotQ6J9S13e-26RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLG7JT221e-100G7JT22_MEDTR; AP2 domain class transcription factor
STRINGAES913441e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-28related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]