PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g109660.1
Common NameMTR_4g109660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 307aa    MW: 33901.8 Da    PI: 9.5701
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g109660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.12.7e-2955154389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk +eWL+++ +  i++l+ ++ +++ ++++++  ++ +    +        
  Medtr4g109660.1  55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDIDKLPPLDIPQS-FTQQQTLFQQPA---GStcfslggg 144
                      78*************************************************************66655.442222222222...1123455555 PP

              TCP  89 .........k 89 
                               k
  Medtr4g109660.1 145 fygmnqtkgK 154
                      5443322221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.59656114IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-2856161IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIESSRKDYN KEATKQEGEH GRMESEKFSN KAIATSRQWT SLRNPRIVRV SRSLGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV EWLIEATQSD IDKLPPLDIP  120
QSFTQQQTLF QQPAGSTCFS LGGGFYGMNQ TKGKEAESSE KGNYYNTNNS SNGFPFPYNL  180
DPSSTLSLSQ FGSHHGNLFP SYQISTSGSG MQFSSSSSNL TVPNSSGNSQ LLFCPSVMPL  240
PSLFTSTLNA PSMESSDIQR QSNHVQILNS SSNGSFIPTI HLPINSPFRR HPTLFSSKLL  300
DSDHNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2061115155Putative transcription factor PCF6
5zkt_B9e-2061115155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g109660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637615.10.0transcription factor TCP17 isoform X1
TrEMBLA0A396IG220.0A0A396IG22_MEDTR; Putative transcription factor TCP family
STRINGXP_004508663.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]