PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g100860.1
Common NameMTR_4g100860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 316aa    MW: 35506.7 Da    PI: 7.7302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g100860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074210230323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++Cgk+F+++  L +H + +
  Medtr4g100860.1 210 CENCGKTFRSSRALGSHRSIC 230
                      *****************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.7E-8328IPR007087Zinc finger, C2H2
SMARTSM003550.054426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035575208228IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746208235IPR007087Zinc finger, C2H2
PfamPF139120.021208227IPR007087Zinc finger, C2H2
SuperFamilySSF576673.37E-7208268No hitNo description
PROSITE profilePS501579.494246268IPR007087Zinc finger, C2H2
SMARTSM003550.17246268IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-10246268IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MERHKCKLCS RTFGNGRALG GHMKAHLAIA KSQQKQFTQP GSFSSSESEE DEEEEEKALI  60
NYVLRENPKK SLKVADPEFS FVRETESVIV QDRESETESK NNPTRQQRSK RNRKQNNDNN  120
HQNFLPQKKP KPSFMVPTTP SQFTEQEPVS SVSDTSPEED VAMCLMMLSR DKWSRKMNNV  180
NNVEQEEDEG SVEKISKVKL LKRVRGKHLC ENCGKTFRSS RALGSHRSIC CRDEAKNGNG  240
NDDKIFECPF CFKVFGSGQA LGGHKRSHLM IPSSSTSTAN VNVNPTAARF KDSFIDLNMP  300
APLEEEDDLS VVSDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g100860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834300.0AC183430.31 Medicago truncatula chromosome 8 clone mth2-176i20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608704.10.0zinc finger protein ZAT9
TrEMBLG7JIV80.0G7JIV8_MEDTR; C2H2-type zinc-finger protein, putative
STRINGAES909010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-41C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]