PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g099230.1
Common NameMTR_4g099230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 157aa    MW: 17291.8 Da    PI: 8.1327
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g099230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.21.6e-343101299
           DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      CaaCk++rrkC+++C lapyfpa++p+ f  +h+lFG+sn++k+lk++++e+ +++am+s+++e+++rar P  G++gvi+ +   l+++  el
  Medtr4g099230.1   3 CAACKYQRRKCSPSCDLAPYFPADKPEIFYKAHRLFGVSNMVKMLKNIDDEHlKDEAMKSIIFESDMRARFPATGCLGVIHMYGGMLKKSVDEL 96 
                      ************************************************88887****************************9999999999998 PP

           DUF260  95 allke 99 
                      +++++
  Medtr4g099230.1  97 DHVRN 101
                      88775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3381103IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-32399IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVCAACKYQR RKCSPSCDLA PYFPADKPEI FYKAHRLFGV SNMVKMLKNI DDEHLKDEAM  60
KSIIFESDMR ARFPATGCLG VIHMYGGMLK KSVDELDHVR NLLAYCKQHN LSSAPSTSSH  120
FSNTPIGANL NTSFMDSTKE AQLNGDNGGV DPQGKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-22310512114LOB family transfactor Ramosa2.1
5ly0_B2e-22310512114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g099230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457575.11e-115LOB domain-containing protein 24
SwissprotQ9STS61e-29LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A072UQH11e-114A0A072UQH1_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES998507e-49(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-32LOB domain-containing protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  3. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]