PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g098500.2
Common NameMTR_4g098500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LSD
Protein Properties Length: 155aa    MW: 15911.5 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g098500.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.4e-153660125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP GA+sV+Ca+C++V
  Medtr4g098500.2 36 CSGCRNLLMYPVGATSVCCAVCNAV 60
                     ************************9 PP

2zf-LSD146.75.3e-157599125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC+tlL+Y rGA+sV+C++C+tV
  Medtr4g098500.2 75 CGGCHTLLMYIRGATSVQCSCCHTV 99
                     ************************9 PP

3zf-LSD141.71.9e-13113137125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  Medtr4g098500.2 113 CGNCRMLLMYQYGARSVKCAVCNFV 137
                      ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.1E-430134No hitNo description
TIGRFAMsTIGR010536.6E-143363IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.42E-536134IPR011031Multihaem cytochrome
PfamPF069431.4E-113660IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.6E-1572101IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-127599IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.4E-12110140IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12113137IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPVPLAPYPT PPPAPAPAPA PYTTPPTNGA QSQLVCSGCR NLLMYPVGAT SVCCAVCNAV  60
TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL  120
MYQYGARSVK CAVCNFVTSV GASASTTEPQ KFST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.120170.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g098500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532360.0BT053236.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-O-19 unknown mRNA.
GenBankBT1383240.0BT138324.1 Medicago truncatula clone JCVI-FLMt-16N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608622.11e-106protein LOL1
SwissprotQ93ZB14e-81LOL1_ARATH; Protein LOL1
TrEMBLB7FMB31e-105B7FMB3_MEDTR; LSD1-type zinc finger protein
STRINGAES908191e-105(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-65lsd one like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]