PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g095600.1
Common NameMTR_4g095600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 234aa    MW: 25403 Da    PI: 7.6662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g095600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.6e-312103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q
  Medtr4g095600.1   2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  Medtr4g095600.1  96 AAVETVLR 103
                      **998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8921107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPL PELTLLDAPL  120
TATDEASEAE DGGADAMWKI REPNFGLASS RSSNKVCSGS KRRRSEEFVK VPAAINLDLR  180
LTPIFQQKAV EERRHGSPSM TSEESVTTTA CLETGIGDRW SHGGDRKVLN LFI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.79640.0glandular trichome| leaf| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g095600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1377030.0AC137703.43 Medicago truncatula chromosome 8 clone mth2-11d24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608484.11e-172LOB domain-containing protein 38
SwissprotQ9SN231e-82LBD38_ARATH; LOB domain-containing protein 38
TrEMBLG7JDY01e-171G7JDY0_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES906811e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-77LOB domain-containing protein 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]