PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g079580.1
Common NameMTR_096s0002, MTR_4g079580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 336aa    MW: 37656 Da    PI: 6.5092
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g079580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.88e-34191421111
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssasnss 86 
                      a+gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++       +    +++ ++ ++++++ ++s
  Medtr4g079580.1  19 ATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpisE----NQTlKPLEEVQNVVANS 108
                      589**************************************************************88753330....33344444444444444 PP

              TCP  87 sg.........kaaksaakskksqksaasalnla 111
                      sg         +  +++  ++ s+++ ++++++ 
  Medtr4g079580.1 109 SGmvvgetsesNGYSFHLLRQLSENQGNHNSAFI 142
                      4445555555444444444444444444444333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3020166IPR005333Transcription factor, TCP
PROSITE profilePS5136931.912280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRSTGGEIVQ VEGGHIVRAT GKKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD  60
RPSKAVDWLI KKAKSSIDKL AELPPWHPIS ENQTLKPLEE VQNVVANSSG MVVGETSESN  120
GYSFHLLRQL SENQGNHNSA FISPHNVETD PIPFFPTTSS TSSSINFQNY PSENLGLSLH  180
SFQDHNGFIP WQSQQVCENH ETSNENQNQN QTFFENQYHR IENWNNETTN DYIKKVGFMV  240
NSQSFLGQGS GSEYSPNETL QSNFSHSVRT WNEIPMDSSS EVHHHRSQQV HQASIFGSRF  300
VSDGLAGFCI PDTVQGGEEG HRVSSNRPSS SPNHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-222780154Putative transcription factor PCF6
5zkt_B3e-222780154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g079580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1448930.0AC144893.15 Medicago truncatula clone mth2-29d23, complete sequence.
GenBankAC1716190.0AC171619.9 Medicago truncatula clone mth2-160a1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607555.10.0transcription factor TCP10
TrEMBLG7ZZY90.0G7ZZY9_MEDTR; Putative transcription factor TCP family
STRINGAES847770.0(Medicago truncatula)
STRINGAES897520.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.17e-48TCP domain protein 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]