PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g068320.1
Common NameMTR_4g068320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 430aa    MW: 48515.1 Da    PI: 8.8576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g068320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-17796298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      k  + +++l+ ++l+lp +f++++gg+   s t+tl+ ++g +W+v +  +k ++++++ +GW+eFv+   + +g  +vFk++g+s f  +v +f
  Medtr4g068320.1  7 HKLVL-PSTLQAKQLRLPDDFMRKYGGD--ISPTVTLTVPDGSVWRVIM--KKVDNKFWFLDGWNEFVQNYSISTGYLLVFKYEGKSHF--TVNIF 95
                     44444.45555567***********998..6779***************..*********************************99999..88888 PP

                     - CS
               B3 98 r 98
                     +
  Medtr4g068320.1 96 S 96
                     6 PP

2B357.91.8e-18298388498
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l+ ++e  l v+v
  Medtr4g068320.1 298 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---IIKLQISDGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELVATKEVVLQVTV 386
                      78899******************866643...6***************665555..66*************************99999999999 PP

                      E- CS
               B3  97 fr 98 
                      fr
  Medtr4g068320.1 387 FR 388
                      98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-23396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-23396IPR015300DNA-binding pseudobarrel domain
CDDcd100179.03E-20496No hitNo description
PROSITE profilePS5086313.366598IPR003340B3 DNA binding domain
SMARTSM010193.9E-19698IPR003340B3 DNA binding domain
PfamPF023621.3E-14996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-24287388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-24288389IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-22293388No hitNo description
SMARTSM010194.8E-17295390IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888295390IPR003340B3 DNA binding domain
PfamPF023621.6E-16298388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPSPSFHKLV LPSTLQAKQL RLPDDFMRKY GGDISPTVTL TVPDGSVWRV IMKKVDNKFW  60
FLDGWNEFVQ NYSISTGYLL VFKYEGKSHF TVNIFSLPTS EINYQSPAQR SNEASLFGKR  120
LTIFEEMEDE DSVEIMESSP TKLTPSLLQN KAVSGSADKL TPGKSRPPPA LQNLFNGSKL  180
NSINWGEGGN TPSRNDNSVD NQLTRDIGLQ FNVVEFKKSN EELKLRAATD EKVKKTAVKK  240
RKSDVQEPPS EHEDEVEMRN RFYESASARK RTATAEEREK AINAAKTFEP SNPFCRVVLR  300
PSYLYRGCIM YLPSCFAEKN LNGVSGIIKL QISDGRQWPV RCLYRGGRAK LSQGWFEFSL  360
ENNLGEGDVC VFELVATKEV VLQVTVFRIT EDEGPLSPQP LQQNQHVNPV KLVNVPFQHH  420
LASTKLIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7026139115144B3 domain-containing transcription factor VRN1
4i1k_B2e-7026139115144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.19070.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g068320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0516530.0BT051653.1 Medicago truncatula clone MTYF5_F6_F7_F81G-K-20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606842.10.0B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-124VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLG7JEY10.0G7JEY1_MEDTR; B3 domain transcription factor VRN1-like protein
STRINGAES890390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-125B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]