PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g063790.1
Common NameMTR_4g063790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19689.6 Da    PI: 9.8115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g063790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.7e-161148340
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     i  +s+r++tf kR+ngi+KK +E+S+LC++e++ ii 
  Medtr4g063790.1 11 ITGDSKRSITFRKRKNGIMKKINEISTLCGVEACAIIS 48
                     66789*****************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.638147IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-18160IPR002100Transcription factor, MADS-box
CDDcd002664.08E-25285No hitNo description
SuperFamilySSF554557.06E-24294IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTRNKVKLAY ITGDSKRSIT FRKRKNGIMK KINEISTLCG VEACAIISEQ NSPQVEVWPS  60
DSGVRSVISR FRSLPGVEQS KKMVDQEVFL RQTIGKVYGQ LKKQRLETRK KEMTNIIDHY  120
IQTVEFNGNS MSKYDLNDFS SFIDENLKEV DRKMKEMTIK DQDEVGNEVG L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456110.11e-124MADS-box transcription factor family protein
SwissprotQ9FJK35e-39AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072UL531e-123A0A072UL53_MEDTR; MADS-box transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-40AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]