PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g061200.4
Common NameMTR_4g061200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 380aa    MW: 42178.7 Da    PI: 8.2928
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g061200.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.3e-17130179155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Medtr4g061200.4 130 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 179
                      78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-9130179IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15130188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-17131187IPR001471AP2/ERF domain
CDDcd000187.68E-11131186No hitNo description
PROSITE profilePS5103217.411131187IPR001471AP2/ERF domain
SMARTSM003808.6E-31131193IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-6222266IPR016177DNA-binding domain
CDDcd000184.22E-11222267No hitNo description
SMARTSM003806.4E-9223271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLDLNLNDSN STDSTQNQNH NSPMISKNFP QTVDESGTSN SSIVNADGDE DSCSTRDFTL  60
SFDILKTEGS NSNNVVTKEF FPVKLQATSS SFSMKNGSVD FSINQNEEMK IVQAPQQVKK  120
SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV  180
GADINFNLND YDDDLKQTKN LSKEEFVQIL RRQSNGFSRG SSKYRGVTLH KCGRWEARMG  240
QFLGKKAYDK AAIQNNGREA MTNFEASTYE GEMKSAAINE GGSQNLDLNL GIATPGPSPR  300
ENWGQLHFPS SVPYTMQAGR SSKMETNVSG IGDPSLKRLL ATEERHSLWN GMYPAFFSNE  360
VISPSSYLVL LLESIACFS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g061200.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1451640.0AC145164.11 Medicago truncatula clone mth2-27j21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606515.20.0ethylene-responsive transcription factor RAP2-7 isoform X4
SwissprotQ9SK031e-114RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A072UK490.0A0A072UK49_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGAES887120.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-117related to AP2.7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]